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Home » Dessert Recipes

Pumpkin Whoopie Pies

Published: Oct 8, 2017 · Modified: Jan 22, 2022 by Jennifer Brown · This post may contain affiliate links · 20 Comments

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These paleo pumpkin whoopie pies have a sweet honey Italian meringue filling sandwiched between two moist, cake like pumpkin cookies! This easy and healthy fall dessert recipe is also SCD, gluten free, grain free, dairy free, and refined sugar free. 

A whoopie pie on a checkered tea towel.

These healthy pumpkin whoopie pies are my go-to fall dessert! I always feel like a little kid when eating these!

On their own the cookies aren't very sweet, which is perfect because having a really sweet cookie along with a sweet filling would just be too much!

The cookies are made with a combo of almond flour and almond butter which give the cookies a puffy, cake-like consistency.

The thick and creamy honey Italian meringue is a bit of a process to make but totally worth it!

Ingredients for the pumpkin cookies

  • almond butter
  • blanched finely ground almond flour
  • egg
  • honey
  • pumpkin puree (not pumpkin pie filling)
  • vanilla extract
  • baking soda
  • fine sea salt
  • ground cinnamon, nutmeg, cloves, and ginger

Ingredient Notes:

If using jarred almond butter, ensure that it's very well stirred so that the oil that typically sits on top is well incorporated.

Canned pumpkin should have only pumpkin listed in the ingredient list.

How do I make the cookies?

In the bowl of a stand mixer fitted with the paddle attachment, cream together the almond butter, egg, honey, pumpkin puree, and vanilla extract.

Cookie dough on a parchment paper lined cookie sheet.

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In a separate bowl whisk the almond flour, baking soda, sea salt, cinnamon, nutmeg, cloves, and ginger.

With the mixer running on low, add the dry ingredients to the wet until just combined.

Use a tablespoon to drop the batter onto a parchment paper lined baking sheet (the batter will be VERY sticky) about two inches apart.

Bake the cookies on the middle rack of your oven until puffed up and golden brown.

Allow the cookies to cool completely before filling with the meringue.

Paleo pumpkin cookies cooling on a baking rack.

Speaking of meringue....

how do I make meringue?

Place room temperature egg whites and lemon juice into the bowl of a stand mixer fitted with the whisk attachment and set it to high. Whisk until soft peaks form.

Heat honey in a small saucepan over medium-high heat until it becomes frothy and a candy thermometer reads 240F.

A three photo collage showing the process of making meringue. First photo is egg whites. Second photo is boiling honey in a saucepan. Third photo is shiny and thick white meringue.

With the mixer still running, slowly pour the honey into the bowl with the whipped egg whites and continue beating on high speed for 20 minutes.

The meringue should look thick and glossy when done. I'll be the first to tell you that making Italian meringue is tricky! Making it with honey instead of white sugar is even trickier!

Check out my Honey Italian Meringue post for TONS of tricks and tips to make a foolproof meringue!

Assembling the whoopie pies!

Wait until the pumpkin cookies have cooled completely before placing a heaping tablespoon (or more) on the bottom of one cookie and topping it with another.

A three photo collage showing the assembly of the paleo and scd pumpkin whoopie pies. First photo is a glass bowl filled with meringue frosting. Second photo is putting meringue frosting on a grain free pumpkin cookie. Third photo is an assembled pumpkin whoopie pie.

Paleo Pumpkin whoopie pie tips!

  • The pumpkin cookies can be made ahead of time but it's best to make the meringue and actually fill the cookies just before serving.
  • If you're planning on making just the cookies without adding the meringue filling, you may want to increase the amount of honey in the recipe to ½ cup.
  • If you're in the mood for an ice cream sandwich (and who isn't?!), put a scoop of this Dairy Free Vanilla Cashew Ice Cream in between the cookies!
  • You can also try filling the whoopie pies with this Pumpkin Italian Meringue Buttercream!
A whoopie pie with a bite taken out of it on a checkered tea towel.

Looking for more fall treats?

  • Pear and Havarti Tart
  • Cranberry Apple Crumble
  • Pumpkin Pudding
  • Spice Cake with Pumpkin Frosting
  • Pumpkin Blondies

If you’ve made this recipe, be sure to leave a comment and star rating below! This is the best way you can help support me and the blog!

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This post was originally published in October 2017 and was updated with refined directions in September 2019.

Pumpkin Whoopie Pies

by: Jennifer Brown
These paleo pumpkin whoopie pies have a sweet honey Italian meringue filling sandwiched between two moist, cake like pumpkin cookies! This easy and healthy fall dessert recipe is also SCD, gluten free, grain free, dairy free, and refined sugar free. 
4 from 3 votes
Print Recipe Pin Recipe
Prep Time 20 mins
Cook Time 15 mins
Total Time 35 mins
Course Dessert
Cuisine American
Servings 15 whoopie pies
Calories 195 kcal

Ingredients
  

Pumpkin Cookies

  • 1 cup almond butter, stirred well
  • ¼ cup blanched finely ground almond flour
  • 1 large egg
  • ⅓ cup honey
  • ½ cup pumpkin puree (not pumpkin pie filling)
  • 1 teaspoon vanilla extract
  • 1 ½ teaspoon ground cinnamon
  • ½ teaspoon ground nutmeg
  • ½ teaspoon baking soda
  • ¼ teaspoon sea salt
  • ⅛ teaspoon ground cloves
  • ⅛ teaspoon ground ginger

Meringue Filling

  • 6 Tablespoons egg whites at room temperature
  • ¼ teaspoon fresh lemon juice
  • ½ cup honey

Instructions
 

Pumpkin Cookies

  • Preheat oven to 350F and line a baking sheet with parchment paper.
  • In a large bowl mix together the wet ingredients. In a separate bowl mix together the dry ingredients. Mix the dry ingredients into the wet. Stir until well combined. 
  • The batter will be sticky! Use a tablespoon to drop batter 2 inches apart onto the lined cookie sheet. Bake for 12 to 15 minutes. The cookies should be slightly puffed. Allow to cool for about 5 minutes on baking sheet before transferring to a wire rack or plate to finish cooling. 

Honey Italian Meringue Filling

  • In the bowl of a stand mixer beat the egg whites and lemon juice until soft peaks form. 
  • In a small saucepan over medium-high heat cook honey until a candy thermometer reads 240F and the honey becomes bubbly and frothy. 
  • Reduce mixer speed to medium while slowly pouring the hot honey into the whipped eggs. Increase speed to high and beat for 20 minutes. Meringue should look thick and glossy once done. 

Assembly

  • Ensure the pumpkin cookies and meringue are completely cooled before assembling the whoopie pies. 
  • Place as much or as little meringue on the bottom of a cookie. Place another cookie on top and repeat the process until you've run out of cookies.

Notes

  • If you want to make the pumpkin cookies without the meringue filling, I suggest increasing the honey in the cookie recipe from ⅓ cup to ½ cup.
  • When making the meringue, it's important that the egg whites are at room temp. Also, the mixing bowl should be clean without any residual oil from previous use. Reference my Honey Italian Meringue post for more tips.
  • The pumpkin cookies can be made ahead of time but it's best to make the meringue and assemble the cookies just prior to serving as the meringue tends to deflate over time. 
  • Fill the cookies with Cashew Vanilla Ice Cream for a yummy ice cream sandwich! 
The nutritional information calculated in this recipe is just an estimate. The photos and content above are copyright protected. Please do not use my photos. Please do not copy this recipe and share it on your own website or social media channels. If you wish to tell people about this recipe, you can provide a link back to my blog rather than copying the recipe. Thank you! XO, Jen

Nutrition

Serving: 1whoopie pieCalories: 195kcalCarbohydrates: 23gProtein: 5gFat: 11gSaturated Fat: 1gCholesterol: 14mgSodium: 93mgPotassium: 168mgFiber: 2gSugar: 20gVitamin A: 1291IUVitamin C: 1mgCalcium: 69mgIron: 1mg
Keyword gluten free pumpkin whoopie pies, healthy pumpkin whoopie pies, paleo pumpkin whoopie pies
Did you make this recipe?Let me know how it was by leaving a comment and star rating below!

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These paleo pumpkin whoopie pies have a sweet honey Italian meringue filling sandwiched between two moist, cake like pumpkin cookies! This easy and healthy fall dessert recipe is also SCD, gluten free, grain free, dairy free, and refined sugar free. 

Share this recipe with others!
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Reader Interactions

Comments

  1. Shelly

    December 01, 2019 at 10:25 pm

    If you are having trouble with the meringue try taking the honey closer to 150 degrees. Mine turned out with consistency of marshmallow cream. It’s texture is wonderful as a filling to the cookie. Thank you Jennifer I love the recipe.

    Reply
    • Jennifer

      December 02, 2019 at 5:27 pm

      I’m happy to hear you enjoyed the recipe! Thanks for sharing!!!

      Reply
  2. Kathy Taylor

    January 14, 2019 at 3:50 pm

    Just wondering if the almond flour and butter should be the other way around . It says 1 cup of almond butter and 1/4 cup of almond flour . Mine was the consistency of a thin smooth lol

    Reply
    • Jennifer

      January 15, 2019 at 7:12 am

      Nope, the measurements are correct. If you used jarred almond butter and it hasn't been properly stirred to incorporate the oil that sits on top then the almond butter itself can be very thin which will effect the outcome of the cookies.

      Reply
  3. Lauren

    October 11, 2018 at 12:36 pm

    I made these and the whoopie pies/cookies are wonderful but the meringue filling did not set at all. I followed the recipe to a T and I’ve made Italian meringue before which requires a similar process. This meringue did not set. It was a soupy mess well before and after 20 mins of mixing. Disappointing!

    Reply
    • Jennifer

      October 19, 2018 at 12:38 pm

      I'm glad to hear that you enjoyed the cookies but oh no Lauren, sorry to hear that the meringue didn't set up. I have two thoughts on what may have happened. The first is that the egg whites may not have been at room temperature (it's much more difficult to get the whites to "fluff" up if they're cold). My second thought is that the bowl of your mixer may have had some residual oils from a previous use. When making meringue it's so important the bowl used is squeaky clean or your meringue won't set. I'll be sure to update the recipe with these tips!

      Reply
      • Mary Cagney

        November 23, 2018 at 2:09 pm

        I made the meringue, but it went to soup by the next morning. The cookies were a huge hit though.

        Reply
        • Jennifer

          November 25, 2018 at 7:56 am

          Hi Mary! Meringue is a finicky creature, especially when made with honey. It's typically best to make the meringue the day you're planning on serving the cookies, as stated in the recipe card. Glad to hear everyone enjoyed the cookies!

          Reply
      • Laurie Lyman

        September 28, 2019 at 11:33 pm

        Wiping the bowl and beaters with straight vinegar before use will remove all the grease or any oil in the bowl so you can whip your egg whites easily. Just pour some vinegar onto a paper towel and wipe them down. Let it dry for a couple of minutes and you're good to go.

        Reply
        • Jennifer

          September 29, 2019 at 1:27 pm

          Great tip Laurie!! Thanks for sharing!

          Reply
  4. Lauren

    September 13, 2018 at 6:12 pm

    What kind of ginger? Ginger powder or fresh grated ginger?

    Reply
    • Jennifer

      September 14, 2018 at 7:21 am

      Thanks for catching that Lauren! It takes ginger powder (ground ginger). I've updated the ingredients to clarify!

      Reply
  5. gonzalesb

    December 12, 2017 at 10:32 am

    They look fantastic! Pumpkin is one of my favorite flavors and I am so excited to try these. I've never worked with almond flour before. Is it easy to use or do you have any special tricks when mixing or baking?

    Reply
    • Jennifer

      December 13, 2017 at 6:14 am

      Thank so much! When it comes to almond flour, make sure you buy a bag that says it's been finely ground and make sure to stay away from almond meal. It looks like the same thing but the meal is grainier and will throw off the consistency of the cookies and most baked goods. Bob's Red Mill and Blue Diamond both have almond flours that I've had great success with! Good luck and feel free to reach out with any questions!

      Reply
  6. Victorien

    November 16, 2017 at 12:45 pm

    Thank you very much for the great recipe!
    I just made the cookies yesterday and then put them in the dehydrater on high for 6 hours. They came out wonderful like gingerbread cookies, nice and crunchy!
    I used half almond butter half hazelnut butter, just because I love hazelnuts. This time I made big cookies. Next week I am going to try and see if I can make really small ones to imitate Dutch “pepernoten”. They are a Dutch treat that I really miss since starting SCD 9 years ago and the cookies really resemble that taste.

    Reply
    • Jennifer

      November 16, 2017 at 1:44 pm

      I'm so happy that you enjoyed the cookies! I LOVE that you put them in the dehydrator to make a crispy cookie, I'm going to have to try it!! Thanks so much for sharing Victorien!

      Reply
  7. Natasha

    October 22, 2017 at 6:22 pm

    They look delicious! I'm thinking of making the cookies alone with the filling. In the recipe notes, do you mean increasing the honey from 1/3 to 1/2 - instead instead of 1/4? Thanks

    Reply
    • Natasha

      October 22, 2017 at 6:23 pm

      Meant without the filing ?

      Reply
    • Jennifer

      October 22, 2017 at 7:54 pm

      Hi Natasha! Thanks for catching that typo for me, all fixed now! Yes, you want to increase the honey to 1/2 cup. Hope you enjoy! Come back and let me know what you think of them!

      Reply
  8. Sandi

    October 13, 2017 at 1:00 am

    I love how soft these paleo cookies are in this whoopie pie recipe!

    Reply

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Welcome! Years ago I was diagnosed with an autoimmune disease and found symptom relief by following the specific carbohydrate diet (SCD). Here you'll find deliciously healthy, whole food recipes that can be enjoyed by all!

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